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Bioinformatics (Oxford, England)|August 14, 2016
Extensive complementarity between gene function prediction methodsVedrana Vidulin, Tomislav Šmuc, Fran SupekNature Communications|August 4, 2022
TP53-dependent toxicity of CRISPR/Cas9 cuts is differential across genomic loci and can confound genetic screeningMiguel M Álvarez, Josep Biayna, Fran SupekScience Advances|September 16, 2020
Matching cell lines with cancer type and subtype of origin via mutational, epigenomic, and transcriptomic patternsMarina Salvadores, Francisco Fuster-Tormo, Fran SupekClinical Science (London, England : 1979)|March 11, 2022
Spectrum of DNA mismatch repair failures viewed through the lens of cancer genomics and implications for therapyDavid Mas-Ponte, Marcel McCullough, Fran SupekPlos Computational Biology|April 16, 2019
Passenger mutations accurately classify human tumorsMarina Salvadores, David Mas-Ponte, Fran SupekMicrobiome|July 12, 2018
The evolutionary signal in metagenome phyletic profiles predicts many gene functionsVedrana Vidulin, Tomislav Šmuc, Sašo Džeroski, et al.Genome Medicine|July 3, 2025
Joint inference of mutational signatures from indels and single-nucleotide substitutions reveals prognostic impact of DNA repair deficienciesPatricia Ferrer-Torres, Iván Galván-Femenía, Fran SupekPlos One|July 27, 2011
REVIGO summarizes and visualizes long lists of gene ontology termsFran Supek, Matko Bošnjak, Nives Škunca, et al.Genome Biology and Evolution|May 15, 2015
Global Shifts in Genome and Proteome Composition Are Very Tightly CoupledMaria Brbić, Tobias Warnecke, Anita Kriško, et al.Cell Reports|June 3, 2014
Signatures of conformational stability and oxidation resistance in proteomes of pathogenic bacteriaAnita Vidovic, Fran Supek, Andrea Nikolic, et al.Pageof 18