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BMC Evolutionary Biology|June 24, 2006
PHOG: a database of supergenomes built from proteome complementsIgor V Merkeev, Pavel S Novichkov, Andrey A MironovBMC Evolutionary Biology|June 24, 2006
PHOG-BLAST--a new generation tool for fast similarity search of protein familiesIgor V Merkeev, Andrey A MironovNucleic Acids Research|June 25, 2004
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteinsOlga V Kalinina, Pavel S Novichkov, Andrey A Mironov, et al.Nucleic Acids Research|December 5, 2006
RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomesAlexei E Kazakov, Michael J Cipriano, Pavel S Novichkov, et al.Nucleic Acids Research|June 15, 2010
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approachPavel S Novichkov, Dmitry A Rodionov, Elena D Stavrovskaya, et al.Gigascience|October 17, 2022
CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysisPavel S Novichkov, John-Marc Chandonia, Adam P ArkinIn Silico Biology|May 24, 2003
Two genetic algorithms for identification of regulatory signalsElena D Stavrovskaya, Andrey A MironovJournal of Bacteriology|November 4, 2008
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomesPavel S Novichkov, Yuri I Wolf, Inna Dubchak, et al.Frontiers in Microbiology|June 11, 2021
Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial CommunitiesStanislav N Iablokov, Pavel S Novichkov, Andrei L Osterman, et al.Nucleic Acids Research|October 11, 2008
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotesPavel S Novichkov, Igor Ratnere, Yuri I Wolf, et al.Pageof 10