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Current Opinion in Structural Biology|April 19, 2019
Computational approaches to macromolecular interactions in the cellIlya A Vakser, Eric J DeedsProceedings of the National Academy of Sciences of the United States of America|October 3, 2022
Docking-based long timescale simulation of cell-size protein systems at atomic resolutionIlya A Vakser, Sergei Grudinin, Nathan W Jenkins, et al.Biophysical Journal|November 25, 2014
Protein-protein docking: from interaction to interactomeIlya A VakserProteomics|September 5, 2023
Prediction of protein interactions is essential for studying biomolecular mechanismsIlya A VakserCurrent Opinion in Structural Biology|January 9, 2013
Low-resolution structural modeling of protein interactomeIlya A VakserBMC Bioinformatics|July 13, 2011
DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein dockingShiyong Liu, Ilya A VakserNucleic Acids Research|July 18, 2006
GRAMM-X public web server for protein-protein dockingAndrey Tovchigrechko, Ilya A VakserProteins|June 28, 2005
Development and testing of an automated approach to protein dockingAndrei Tovchigrechko, Ilya A VakserProtein Science : a Publication of the Protein Society|April 13, 2004
Shorter side chains optimize helix-helix packingSulin Jiang, Ilya A VakserPageof 13