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IEEE/ACM Transactions on Computational Biology and Bioinformatics|February 18, 2016
Discovering Motifs in Biological Sequences Using the Micron Automata ProcessorIndranil Roy, Srinivas AluruJournal of Bioinformatics and Computational Biology|July 5, 2006
Efficient algorithms and software for detection of full-length LTR retrotransposonsAnantharaman Kalyanaraman, Srinivas AluruProceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Efficient algorithms and software for detection of full-length LTR retrotransposonsAnantharaman Kalyanaraman, Srinivas AluruJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 7, 2025
Disambiguating a Soft Metagenomic ClusteringRahul Nihalani, Jaroslaw Zola, Srinivas AluruJournal of Bioinformatics and Computational Biology|February 23, 2013
Large-scale metagenomic sequence clustering on map-reduce clustersXiao Yang, Jaroslaw Zola, Srinivas AluruBioinformatics (Oxford, England)|July 12, 2021
A variant selection framework for genome graphsChirag Jain, Neda Tavakoli, Srinivas AluruMicroarrays (Basel, Switzerland)|September 23, 2016
Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public RepositoriesSriram Chockalingam, Maneesha Aluru, Srinivas AluruBMC Genomics|December 22, 2020
A comprehensive evaluation of long read error correction methodsHaowen Zhang, Chirag Jain, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 4, 2018
Fast de Bruijn Graph Compaction in Distributed Memory EnvironmentsTony Pan, Rahul Nihalani, Srinivas AluruPageof 10