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Proceedings of the National Academy of Sciences of the United States of America|May 25, 2005
Subtree power analysis and species selection for comparative genomicsJon D McAuliffe, Michael I Jordan, Lior PachterDatabase : the Journal of Biological Databases and Curation|November 28, 2020
A curated database reveals trends in single-cell transcriptomicsValentine Svensson, Eduardo da Veiga Beltrame, Lior PachterBiorxiv : the Preprint Server for Biology|September 25, 2023
Universal preprocessing of single-cell genomics dataA Sina Booeshaghi, Delaney K Sullivan, Lior PachterJournal of Bacteriology|November 4, 2008
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomesPavel S Novichkov, Yuri I Wolf, Inna Dubchak, et al.BMC Genomics|October 20, 2007
Short sequence motifs, overrepresented in mammalian conserved non-coding sequencesSimon Minovitsky, Philip Stegmaier, Alexander Kel, et al.Nature Methods|March 3, 2010
Visualizing genomes: techniques and challengesCydney B Nielsen, Michael Cantor, Inna Dubchak, et al.Nature Communications|December 9, 2022
Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experimentsGennady Gorin, John J Vastola, Meichen Fang, et al.Biorxiv : the Preprint Server for Biology|March 10, 2025
Geospatially informed representation of spatial genomics data with SpatialFeatureExperimentLambda Moses, Alik Huseynov, Joseph M Rich, et al.Nucleic Acids Research|March 14, 2015
A diverse epigenetic landscape at human exons with implication for expressionMeromit Singer, Idit Kosti, Lior Pachter, et al.Nature Biotechnology|April 5, 2016
Near-optimal probabilistic RNA-seq quantificationNicolas L Bray, Harold Pimentel, Páll Melsted, et al.Pageof 27