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Plos Computational Biology|August 17, 2023
The specious art of single-cell genomicsTara Chari, Lior PachterNucleic Acids Research|August 21, 2021
SWALO: scaffolding with assembly likelihood optimizationAtif Rahman, Lior PachterGenome Research|April 3, 2004
MAVID: constrained ancestral alignment of multiple sequencesNicolas Bray, Lior PachterGenome Research|April 3, 2004
Visualization of multiple genome annotations and alignments with the K-BROWSERKushal Chakrabarti, Lior PachterJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 20, 2005
Large multiple organism gene finding by collapsed Gibbs samplingSourav Chatterji, Lior PachterProceedings of the National Academy of Sciences of the United States of America|November 10, 2004
Tropical geometry of statistical modelsLior Pachter, Bernd SturmfelsBiophysical Reports|January 20, 2023
Length biases in single-cell RNA sequencing of pre-mRNAGennady Gorin, Lior PachterBMC Genomics|May 31, 2015
Controlling for conservation in genome-wide DNA methylation studiesMeromit Singer, Lior PachterGenomics|May 15, 2007
Patterns of gene duplication and intron loss in the ENCODE regions suggest a confounding factorSourav Chatterji, Lior PachterPageof 27