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Bioinformatics (Oxford, England)|May 17, 2013
Updating RNA-Seq analyses after re-annotationAdam Roberts, Lorian Schaeffer, Lior PachterJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 26, 2003
Picking alignments from (Steiner) treesFumei Lam, Marina Alexandersson, Lior PachterPlos One|April 28, 2017
Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathwaysLynn Yi, Harold Pimentel, Lior PachterBiorxiv : the Preprint Server for Biology|April 17, 2026
The Rayleigh Quotient and Contrastive Principal Component Analysis IIKayla Jackson, Maria Carilli, Lior PachterGenome Research|January 30, 2009
Multiple whole-genome alignments without a reference organismInna Dubchak, Alexander Poliakov, Andrey Kislyuk, et al.Nucleic Acids Research|June 26, 2003
SLAM web server for comparative gene finding and alignmentSimon Cawley, Lior Pachter, Marina AlexanderssonJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 23, 2002
Applications of generalized pair hidden Markov models to alignment and gene finding problemsLior Pachter, Marina Alexandersson, Simon CawleyBioinformatics (Oxford, England)|March 21, 2008
Combining statistical alignment and phylogenetic footprinting to detect regulatory elementsRahul Satija, Lior Pachter, Jotun HeinPlos Computational Biology|January 21, 2025
Trajectory inference from single-cell genomics data with a process time modelMeichen Fang, Gennady Gorin, Lior PachterGenomics|May 16, 2006
Conservation patterns in different functional sequence categories of divergent Drosophila speciesDmitri Papatsenko, Andrey Kislyuk, Michael Levine, et al.Pageof 27