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Cell|July 29, 2017
Clustered Mutation Signatures Reveal that Error-Prone DNA Repair Targets Mutations to Active GenesFran Supek, Ben LehnerNature Communications|May 13, 2025
DiffInvex identifies evolutionary shifts in driver gene repertoires during tumorigenesis and chemotherapyAhmed Khalil, Fran SupekGenome Biology|September 30, 2025
Variable efficiency of nonsense-mediated mRNA decay across human tissues, tumors and individualsGuillermo Palou-Márquez, Fran SupekNature Genetics|August 5, 2020
DNA mismatch repair promotes APOBEC3-mediated diffuse hypermutation in human cancersDavid Mas-Ponte, Fran SupekNucleic Acids Research|April 8, 2024
Mutation rate heterogeneity at the sub-gene scale due to local DNA hypomethylationDavid Mas-Ponte, Fran SupekNature Communications|December 4, 2021
Higher order genetic interactions switch cancer genes from two-hit to one-hit driversSolip Park, Fran Supek, Ben LehnerPlos One|January 11, 2022
A framework for mutational signature analysis based on DNA shape parametersAleksandra Karolak, Jurica Levatić, Fran SupekScientific Reports|December 22, 2019
Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotypeMatej Mihelčić, Tomislav Šmuc, Fran SupekNature Genetics|August 22, 2024
Genome-scale quantification and prediction of pathogenic stop codon readthrough by small moleculesIgnasi Toledano, Fran Supek, Ben LehnerPlos Computational Biology|January 4, 2013
Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific mannerTobias Warnecke, Fran Supek, Ben LehnerPageof 10