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Proteome Science|July 5, 2012
Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surfaceBrian S Olson, Amarda ShehuBMC Bioinformatics|April 27, 2019
Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure predictionAhmed Bin Zaman, Amarda ShehuProteome Science|February 26, 2014
Rapid sampling of local minima in protein energy surface and effective reduction through a multi-objective filterBrian S Olson, Amarda ShehuJournal of Bioinformatics and Computational Biology|February 6, 2020
Building maps of protein structure spaces in template-free protein structure predictionAhmed Bin Zaman, Amarda ShehuBiomolecules|July 27, 2022
Data Size and Quality Matter: Generating Physically-Realistic Distance Maps of Protein Tertiary StructuresFardina Fathmiul Alam, Amarda ShehuJournal of Bioinformatics and Computational Biology|June 30, 2011
In search of the protein native state with a probabilistic sampling approachBrian Olson, Kevin Molloy, Amarda ShehuJournal of Bioinformatics and Computational Biology|February 11, 2021
Unsupervised multi-instance learning for protein structure determinationFardina Fathmiul Alam, Amarda ShehuIEEE/ACM Transactions on Computational Biology and Bioinformatics|January 4, 2014
Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure predictionKevin Molloy, Sameh Saleh, Amarda ShehuCurrent Opinion in Structural Biology|December 18, 2020
Generative deep learning for macromolecular structure and dynamicsPourya Hoseini, Liang Zhao, Amarda ShehuBMC Structural Biology|February 26, 2014
A population-based evolutionary search approach to the multiple minima problem in de novo protein structure predictionSameh Saleh, Brian Olson, Amarda ShehuPageof 8