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International Journal of Molecular Sciences|April 27, 2024
Elucidating the Role of Wildtype and Variant FGFR2 Structural Dynamics in (Dys)Function and DisorderYiyang Lian, Dale Bodian, Amarda ShehuPlos One|July 18, 2014
Effective automated feature construction and selection for classification of biological sequencesUday Kamath, Kenneth De Jong, Amarda ShehuIEEE/ACM Transactions on Computational Biology and Bioinformatics|July 14, 2016
Structure-Guided Protein Transition Modeling with a Probabilistic Roadmap AlgorithmTatiana Maximova, Erion Plaku, Amarda ShehuIEEE/ACM Transactions on Computational Biology and Bioinformatics|April 4, 2017
Improving Recognition of Antimicrobial Peptides and Target Selectivity through Machine Learning and Genetic ProgrammingDaniel Veltri, Uday Kamath, Amarda ShehuBioinformatics (Oxford, England)|March 29, 2018
Deep learning improves antimicrobial peptide recognitionDaniel Veltri, Uday Kamath, Amarda ShehuProtein Science : a Publication of the Protein Society|February 22, 2008
Unfolding the fold of cyclic cysteine-rich peptidesAmarda Shehu, Lydia E Kavraki, Cecilia ClementiJournal of Bioinformatics and Computational Biology|February 6, 2020
From molecular energy landscapes to equilibrium dynamics via landscape analysis and markov state modelsKazi Lutful Kabir, Nasrin Akhter, Amarda ShehuBiophysical Journal|December 13, 2006
On the characterization of protein native state ensemblesAmarda Shehu, Lydia E Kavraki, Cecilia ClementiBMC Bioinformatics|June 7, 2019
Attenuating dependence on structural data in computing protein energy landscapesDavid Morris, Tatiana Maximova, Erion Plaku, et al.Bioinformatics Advances|August 26, 2024
In the twilight zone of protein sequence homology: do protein language models learn protein structure?Anowarul Kabir, Asher Moldwin, Yana Bromberg, et al.Pageof 8