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Proteins|August 19, 2006
Modeling protein conformational ensembles: from missing loops to equilibrium fluctuationsAmarda Shehu, Cecilia Clementi, Lydia E KavrakiProteins|March 13, 2009
Multiscale characterization of protein conformational ensemblesAmarda Shehu, Lydia E Kavraki, Cecilia ClementiMolecules (Basel, Switzerland)|March 8, 2020
Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy SelectionFardina Fathmiul Alam, Taseef Rahman, Amarda ShehuBiomolecules|October 23, 2021
Computing the Structural Dynamics of RVFV L Protein Domain in Aqueous Glycerol SolutionsGideon K Gogovi, Swabir Silayi, Amarda ShehuIEEE Transactions on Nanobioscience|April 29, 2020
Anomaly Detection-Based Recognition of Near-Native Protein StructuresSivani Tadepalli, Nasrin Akhter, Daniel Barbara, et al.BMC Bioinformatics|December 10, 2020
Decoy selection for protein structure prediction via extreme gradient boosting and rankingNasrin Akhter, Gopinath Chennupati, Hristo Djidjev, et al.Molecules (Basel, Switzerland)|March 6, 2021
Generative Adversarial Learning of Protein Tertiary StructuresTaseef Rahman, Yuanqi Du, Liang Zhao, et al.Plos Computational Biology|September 2, 2015
Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary AlgorithmRudy Clausen, Buyong Ma, Ruth Nussinov, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|January 24, 2017
From Optimization to Mapping: An Evolutionary Algorithm for Protein Energy LandscapesEmmanuel Sapin, Kenneth A De Jong, Amarda ShehuCold Spring Harbor Perspectives in Biology|April 15, 2024
Variant Effect Prediction in the Age of Machine LearningYana Bromberg, R Prabakaran, Anowarul Kabir, et al.Pageof 8