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Methods in Molecular Biology (Clifton, N.J.)|April 5, 2019
Learning Organizations of Protein Energy Landscapes: An Application on Decoy Selection in Template-Free Protein Structure PredictionNasrin Akhter, Liban Hassan, Zahra Rajabi, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|December 9, 2021
Adaptive Stochastic Optimization to Improve Protein Conformation SamplingAhmed Bin Zaman, Toki Tahmid Inan, Kenneth De Jong, et al.Biomolecules|October 17, 2019
Unsupervised and Supervised Learning over theEnergy Landscape for Protein Decoy SelectionNasrin Akhter, Gopinath Chennupati, Kazi Lutful Kabir, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 16, 2017
Sample-Based Models of Protein Energy Landscapes and Slow Structural RearrangementsTatiana Maximova, Zijing Zhang, Daniel B Carr, et al.BMC Genomics|August 19, 2016
Computing energy landscape maps and structural excursions of proteinsEmmanuel Sapin, Daniel B Carr, Kenneth A De Jong, et al.Molecules (Basel, Switzerland)|March 3, 2019
Graph-Based Community Detection for Decoy Selection in Template-Free Protein Structure PredictionKazi Lutful Kabir, Liban Hassan, Zahra Rajabi, et al.Proceedings of the National Academy of Sciences of the United States of America|August 27, 2009
Restriction versus guidance in protein structure predictionJoseph A Hegler, Joachim Lätzer, Amarda Shehu, et al.IEEE Transactions on Nanobioscience|May 3, 2015
Characterizing Energy Landscapes of Peptides Using a Combination of Stochastic AlgorithmsDidier Devaurs, Kevin Molloy, Marc Vaisset, et al.BMC Genomics|September 27, 2018
From mutations to mechanisms and dysfunction via computation and mining of protein energy landscapesWanli Qiao, Nasrin Akhter, Xiaowen Fang, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|April 18, 2012
An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site predictionUday Kamath, Jack Compton, Rezarta Islamaj-Doğan, et al.Pageof 8