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Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|October 4, 2005
Geometric and physical considerations for realistic protein modelsIsaac A Hubner, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|May 20, 2004
Simulation, experiment, and evolution: understanding nucleation in protein S6 foldingIsaac A Hubner, Mikael Oliveberg, Eugene I ShakhnovichJournal of Molecular Biology|April 21, 2004
Commitment and nucleation in the protein G transition stateIsaac A Hubner, Jun Shimada, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|November 11, 2006
Understanding ensemble protein folding at atomic detailIsaac A Hubner, Eric J Deeds, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|December 21, 2005
High-resolution protein folding with a transferable potentialIsaac A Hubner, Eric J Deeds, Eugene I ShakhnovichJournal of Molecular Biology|May 14, 2005
Nucleation and the transition state of the SH3 domainIsaac A Hubner, Katherine A Edmonds, Eugene I ShakhnovichJournal of Molecular Biology|May 9, 2006
Common motifs and topological effects in the protein folding transition stateIsaac A Hubner, Magnus Lindberg, Ellinor Haglund, et al.Proceedings of the National Academy of Sciences of the United States of America|March 1, 2006
Identification of the minimal protein-folding nucleus through loop-entropy perturbationsMagnus O Lindberg, Ellinor Haglund, Isaac A Hubner, et al.Bioinformatics (Oxford, England)|March 5, 2005
CoC: a database of universally conserved residues in protein foldsJason E Donald, Isaac A Hubner, Veronica M Rotemberg, et al.Biorxiv : the Preprint Server for Biology|April 16, 2025
Biophysical fitness landscape design traps viral evolutionVaibhav Mohanty, Eugene I ShakhnovichPageof 20