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Plos One|December 21, 2020
Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 dataRuslan N Sharipov, Yury V Kondrakhin, Anna S Ryabova, et al.Journal of Bioinformatics and Computational Biology|April 29, 2016
Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq dataOxana A Volkova, Yury V Kondrakhin, Ivan S Yevshin, et al.Plos One|August 30, 2019
Population size estimation for quality control of ChIP-Seq datasetsSemyon K Kolmykov, Yury V Kondrakhin, Ivan S Yevshin, et al.International Journal of Molecular Sciences|October 26, 2024
Genome of Russian Snow-White Chicken Reveals Genetic Features Associated with Adaptations to Cold and DiseasesIvan S Yevshin, Elena I Shagimardanova, Anna S Ryabova, et al.BMC Research Notes|October 25, 2018
Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq dataIlya E Vorontsov, Alla D Fedorova, Ivan S Yevshin, et al.Journal of Bioinformatics and Computational Biology|June 10, 2025
Prediction and annotation of alternative transcription starts and promoter shift in the chicken genomeValentina A Grushina, Ivan S Yevshin, Oleg A Gusev, et al.Animal Nutrition (Zhongguo Xu Mu Shou Yi Xue Hui)|May 13, 2024
A bird's-eye overview of molecular mechanisms regulating feed intake in chickens-with mammalian comparisonsAnastasiia R Volyanskaya, Ilya R Akberdin, Mikhail A Kulyashov, et al.Nucleic Acids Research|November 21, 2015
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites modelsIvan V Kulakovskiy, Ilya E Vorontsov, Ivan S Yevshin, et al.Nucleic Acids Research|November 16, 2017
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysisIvan V Kulakovskiy, Ilya E Vorontsov, Ivan S Yevshin, et al.Nucleic Acids Research|November 16, 2023
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factorsIlya E Vorontsov, Irina A Eliseeva, Arsenii Zinkevich, et al.Pageof 1