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Genome Biology|March 1, 2026
Multi-context seeds enable fast and high-accuracy read mappingIvan Tolstoganov, Marcel Martin, Nicolas Buchin, et al.Genome Research|October 20, 2021
Effective sequence similarity detection with strobemersKristoffer SahlinGenome Biology|December 15, 2022
Strobealign: flexible seed size enables ultra-fast and accurate read alignmentKristoffer SahlinJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 18, 2020
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based AlgorithmKristoffer Sahlin, Paul MedvedevNature Communications|January 5, 2021
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysisKristoffer Sahlin, Paul MedvedevBioinformatics (Oxford, England)|July 24, 2021
Accurate spliced alignment of long RNA sequencing readsKristoffer Sahlin, Veli MäkinenNucleic Acids Research|August 16, 2024
Improved sub-genomic RNA prediction with the ARTIC protocolThomas Baudeau, Kristoffer SahlinGenome Research|May 22, 2023
Entropy predicts sensitivity of pseudorandom seedsBenjamin Dominik Maier, Kristoffer SahlinBioinformatics (Oxford, England)|April 23, 2025
De novo clustering of large long-read transcriptome datasets with isONclust3Alexander J Petri, Kristoffer SahlinBioinformatics (Oxford, England)|June 30, 2023
isONform: reference-free transcriptome reconstruction from Oxford Nanopore dataAlexander J Petri, Kristoffer SahlinPageof 9