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Advances in Protein Chemistry and Structural Biology|June 25, 2013
DNA sequence motif: a jack of all trades for ChIP-Seq dataIvan V Kulakovskiy, Vsevolod J Makeev
Bioinformatics (Oxford, England)|July 17, 2009
Motif discovery and motif finding from genome-mapped DNase footprint dataIvan V Kulakovskiy, Alexander V Favorov, Vsevolod J Makeev
Algorithms for Molecular Biology : AMB|October 1, 2013
Jaccard index based similarity measure to compare transcription factor binding site modelsIlya E Vorontsov, Ivan V Kulakovskiy, Vsevolod J Makeev
F1000Research|July 18, 2022
Positional weight matrices have sufficient prediction power for analysis of noncoding variantsAlexandr Boytsov, Sergey Abramov, Vsevolod J Makeev, et al.
BMC Genomics|December 24, 2015
Analysis of functional importance of binding sites in the Drosophila gap gene network modelKonstantin Kozlov, Vitaly V Gursky, Ivan V Kulakovskiy, et al.
Plos One|May 30, 2020
Brain-related genes are specifically enriched with long phase 1 intronsEugene F Baulin, Ivan V Kulakovskiy, Mikhail A Roytberg, et al.
Data in Brief|May 6, 2022
RNA-Seq data of ALKBH5 and FTO double knockout HEK293T human cellsEgor A Smolin, Andrey I Buyan, Dmitry N Lyabin, et al.
BMC Plant Biology|March 1, 2019
An update to database TraVA: organ-specific cold stress response in Arabidopsis thalianaAnna V Klepikova, Ivan V Kulakovskiy, Artem S Kasianov, et al.
Biology|June 2, 2021
VTC4 Polyphosphate Polymerase Knockout Increases Stress Resistance of Saccharomyces cerevisiae CellsAlexander Tomashevsky, Ekaterina Kulakovskaya, Ludmila Trilisenko, et al.
Nucleic Acids Research|November 9, 2022
EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexesDaria Marakulina, Ilya E Vorontsov, Ivan V Kulakovskiy, et al.
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