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Nature Communications|February 3, 2024
Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomesRobin Aguilar, Conor K Camplisson, Qiaoyi Lin, et al.
Methods in Molecular Biology (Clifton, N.J.)|September 20, 2017
In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINTBrian J Beliveau, Alistair N Boettiger, Guy Nir, et al.
Science (New York, N.Y.)|July 23, 2016
Spatial organization of chromatin domains and compartments in single chromosomesSiyuan Wang, Jun-Han Su, Brian J Beliveau, et al.
Biorxiv : the Preprint Server for Biology|September 11, 2024
Predicting cell cycle stage from 3D single-cell nuclear-stained imagesGang Li, Eva K Nichols, Valentino E Browning, et al.
Nucleic Acids Research|April 22, 2020
OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environmentMarco Passaro, Martina Martinovic, Valeria Bevilacqua, et al.
Nature Communications|November 17, 2015
Scalable amplification of strand subsets from chip-synthesized oligonucleotide librariesThorsten L Schmidt, Brian J Beliveau, Yavuz O Uca, et al.
Proceedings of the National Academy of Sciences of the United States of America|February 22, 2018
OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probesBrian J Beliveau, Jocelyn Y Kishi, Guy Nir, et al.
Genetics|April 11, 2015
Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse TranscriptomeStefan F Pinter, David Colognori, Brian J Beliveau, et al.
Nature Methods|July 6, 2021
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experimentsElliot A Hershberg, Conor K Camplisson, Jennie L Close, et al.
Plos Genetics|March 24, 2020
Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatinYuh Chwen G Lee, Yuki Ogiyama, Nuno M C Martins, et al.
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