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Microbial Genomics|March 29, 2017
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital wardMark B Schultz, Duy Pham Thanh, Nhu Tran Do Hoan, et al.
Mbio|September 12, 2022
Persistence of Rare Salmonella Typhi Genotypes Susceptible to First-Line Antibiotics in the Remote Islands of SamoaMichael J Sikorski, Tracy H Hazen, Sachin N Desai, et al.
The Lancet. Microbe|July 28, 2025
Global diversity and evolution of Salmonella enterica serovar Panama: a genomic epidemiology studyCaisey V Pulford, Blanca M Perez-Sepulveda, Danielle J Ingle, et al.
Nature Microbiology|August 31, 2016
Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variantsDanielle J Ingle, Marija Tauschek, David J Edwards, et al.
Nature Communications|April 8, 2023
The evolution and international spread of extensively drug resistant Shigella sonneiLewis C E Mason, David R Greig, Lauren A Cowley, et al.
The Lancet. Microbe|June 6, 2022
Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a genomic epidemiological analysisMona L Taouk, George Taiaroa, Shivani Pasricha, et al.
British Journal of Cancer|January 10, 2024
Intratumoral presence of the genotoxic gut bacteria pks+ E. coli, Enterotoxigenic Bacteroides fragilis, and Fusobacterium nucleatum and their association with clinicopathological and molecular features of colorectal cancerJihoon E Joo, Yen Lin Chu, Peter Georgeson, et al.
Nature|October 24, 2024
Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycinAdrianna M Turner, Lucy Li, Ian R Monk, et al.
Biorxiv : the Preprint Server for Biology|August 6, 2025
Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella TyphiDanielle J Ingle, Jane Hawkey, Martin Hunt, et al.
Genome Medicine|December 2, 2025
Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella TyphiDanielle J Ingle, Jane Hawkey, Martin Hunt, et al.
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