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Journal of Open Source Software|September 21, 2020
scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing dataJ Sebastian Paez, Michael K Wendt, Nadia Atallah LanmanJournal of Proteome Research|July 7, 2023
nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics WorkflowsCarolyn Allen, Rico Meinl, J Sebastian Paez, et al.Analytical Chemistry|April 10, 2018
Analytical Pipeline for Discovery and Verification of Glycoproteins from Plasma-Derived Extracellular Vesicles as Breast Cancer BiomarkersI-Hsuan Chen, Hillary Andaluz Aguilar, J Sebastian Paez Paez, et al.Biorxiv : the Preprint Server for Biology|December 19, 2025
Single-cell heterogeneity in interferon induction potential is heritable and governed by variation in cell stateElizabeth A Thayer, Gabriela Shipman, Joel Rivera-Cardona, et al.Research Square|September 2, 2025
Profiling Protein Post-Translational Modifications in Plasma-derived Extracellular Vesicles as Fingerprints for Breast Cancer SubtypesMarco Hadisurya, Hillary Andaluz Aguilar, I-Hsuan Chen, et al.Biorxiv : the Preprint Server for Biology|July 16, 2025
Native, Spatiotemporal Profiling of the Global Human RegulomeLindsay K Pino, Daniele Canzani, Andrea Gutierrez, et al.Biorxiv : the Preprint Server for Biology|April 10, 2026
Carafe2 enables high quality in silico spectral library generation for timsTOF data-independent acquisition proteomicsBo Wen, J Sebastian Paez, Chris Hsu, et al.Nature Communications|April 20, 2022
TNF is a potential therapeutic target to suppress prostatic inflammation and hyperplasia in autoimmune diseaseRenee E Vickman, LaTayia Aaron-Brooks, Renyuan Zhang, et al.Pageof 1