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Methods in Molecular Biology (Clifton, N.J.)|May 31, 2022
The End Restraint Method for Mechanically Perturbing Nucleic Acids In SilicoJack W Shepherd, Mark C LeakeComputational and Structural Biotechnology Journal|August 11, 2021
PySTACHIO: Python Single-molecule TrAcking stoiCHiometry Intensity and simulatiOn, a flexible, extensible, beginner-friendly and optimized program for analysis of single-molecule microscopy dataJack W Shepherd, Ed J Higgins, Adam J M Wollman, et al.Methods (San Diego, Calif.)|November 6, 2020
Molecular crowding in single eukaryotic cells: Using cell environment biosensing and single-molecule optical microscopy to probe dependence on extracellular ionic strength, local glucose conditions, and sensor copy numberJack W Shepherd, Sarah Lecinski, Jasmine Wragg, et al.Current Topics in Membranes|December 4, 2021
Investigating molecular crowding during cell division and hyperosmotic stress in budding yeast with FRETSarah Lecinski, Jack W Shepherd, Lewis Frame, et al.Nucleic Acids Research|January 14, 2020
The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNAJack W Shepherd, Robert J Greenall, Matt I J Probert, et al.Physical Chemistry Chemical Physics : PCCP|September 9, 2020
SerraNA: a program to determine nucleic acids elasticity from simulation dataVictor Velasco-Berrelleza, Matthew Burman, Jack W Shepherd, et al.Journal of the Royal Society, Interface|August 10, 2022
RecA and RecB: probing complexes of DNA repair proteins with mitomycin C in live Escherichia coli with single-molecule sensitivityAlex L Payne-Dwyer, Aisha H Syeda, Jack W Shepherd, et al.Interface Focus|November 4, 2022
Correlating viscosity and molecular crowding with fluorescent nanobeads and molecular probes: in vitro and in vivoSarah Lecinski, Jack W Shepherd, Kate Bunting, et al.Communicative & Integrative Biology|November 9, 2010
Shining the spotlight on functional molecular complexes: The new science of single-molecule cell biologyMark C LeakePhilosophical Transactions of the Royal Society of London. Series B, Biological Sciences|December 26, 2012
The physics of life: one molecule at a timeMark C LeakePageof 12