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Protein Science : a Publication of the Protein Society|December 25, 2024
PairK: Pairwise k-mer alignment for quantifying protein motif conservation in disordered regionsJackson C Halpin, Amy E KeatingBiorxiv : the Preprint Server for Biology|August 2, 2024
PairK: Pairwise k-mer alignment for quantifying protein motif conservation in disordered regionsJackson C Halpin, Amy E KeatingProtein Science : a Publication of the Protein Society|October 28, 2022
Molecular determinants of TRAF6 binding specificity suggest that native interaction partners are not optimized for affinityJackson C Halpin, Dustin Whitney, Federica Rigoldi, et al.Biorxiv : the Preprint Server for Biology|January 16, 2026
A proteome-wide biochemical screen defines binding determinants of the core autophagy protein LC3BJennifer Kosmatka, Cong Liu, Jackson C Halpin, et al.Journal of Molecular Biology|August 21, 2017
Hsp90 Sensitivity to ADP Reveals Hidden Regulation MechanismsJackson C Halpin, Timothy O StreetJournal of Structural Biology|February 9, 2010
Specific coiled-coil interactions contribute to a global model of the structure of the spindle pole bodyNora Zizlsperger, Amy E KeatingProtein Science : a Publication of the Protein Society|October 14, 2025
Training bias and sequence alignments shape protein-peptide docking by AlphaFold and related methodsLindsey Guan, Amy E KeatingProceedings of the National Academy of Sciences of the United States of America|July 2, 2026
Beyond native sequence recovery: Improved modeling of the sequence-energy landscape of protein structuresFoster Birnbaum, Amy E KeatingMethods in Enzymology|February 21, 2013
Multistate protein design using CLEVER and CLASSYChristopher Negron, Amy E KeatingPageof 10