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Biorxiv : the Preprint Server for Biology|June 12, 2025
Synthbar: A Lightweight Tool for Adding Synthetic Barcodes to Sequencing ReadsJacob Morrison, Benjamin K Johnson, Hui ShenBioinformatics (Oxford, England)|December 13, 2023
Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencingJacob Morrison, Wanding Zhou, Benjamin K Johnson, et al.Biorxiv : the Preprint Server for Biology|August 6, 2025
Tranquillyzer: A Flexible Neural Network Framework for Structural Annotation and Demultiplexing of Long-Read TranscriptomesAyush Semwal, Jacob Morrison, Ian Beddows, et al.Genomics, Proteomics & Bioinformatics|June 30, 2026
Tranquillyzer: A Neural Network Framework for Long-read Annotation and DemultiplexingAyush Semwal, Jacob Morrison, Ian Beddows, et al.Epigenetics & Chromatin|June 20, 2021
Evaluation of whole-genome DNA methylation sequencing library preparation protocolsJacob Morrison, Julie M Koeman, Benjamin K Johnson, et al.Nucleic Acids Research|February 27, 2024
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studiesWanding Zhou, Benjamin K Johnson, Jacob Morrison, et al.Nature Communications|July 7, 2025
High-coverage allele-resolved single-cell DNA methylation profiling reveals cell lineage, X-inactivation state, and replication dynamicsNathan J Spix, Walid Abi Habib, Zhouwei Zhang, et al.Nature Communications|March 27, 2025
Impact of BRCA mutations, age, surgical indication, and hormone status on the molecular phenotype of the human Fallopian tubeIan Beddows, Svetlana Djirackor, Dalia K Omran, et al.Biorxiv : the Preprint Server for Biology|June 6, 2025
Efficient profiling of total RNA in single cells with STORM-seqBenjamin K Johnson, Mary F Majewski, H Josh Jang, et al.Pageof 1