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Biorxiv : the Preprint Server for Biology|December 23, 2024
MaAsLin 3: Refining and extending generalized multivariable linear models for meta-omic association discoveryWilliam A Nickols, Thomas Kuntz, Jiaxian Shen, et al.
Nature Methods|January 15, 2026
MaAsLin 3: refining and extending generalized multivariable linear models for meta-omic association discoveryWilliam A Nickols, Thomas Kuntz, Jiaxian Shen, et al.
Leukemia & Lymphoma|December 1, 2020
Investigating the gut microbial community and genes in children with differing levels of change in serum asparaginase activity during pegaspargase treatment for acute lymphoblastic leukemiaKatherine A Dunn, Jessica Connors, Joseph P Bielawski, et al.
Nucleic Acids Research|December 1, 2025
Capturing sequence ambiguity among taxa in a primer-specific manner to improve taxonomic classification of amplicon sequencingJacob T Nearing, Kelsey N Thompson, Thomas Kuntz, et al.
Biorxiv : the Preprint Server for Biology|November 22, 2024
Evaluating metagenomic analyses for undercharacterized environments: what's needed to light up the microbial dark matter?William A Nickols, Lauren J McIver, Aaron Walsh, et al.
Nature Communications|January 18, 2022
Microbiome differential abundance methods produce different results across 38 datasetsJacob T Nearing, Gavin M Douglas, Molly G Hayes, et al.
Molecular Oncology|May 1, 2021
An in vivo genome-wide shRNA screen identifies BCL6 as a targetable biomarker of paclitaxel resistance in breast cancerMohammad Sultan, Jacob T Nearing, Justin M Brown, et al.
The ISME Journal|October 12, 2024
Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methodsTobyn Branck, Zhiji Hu, William A Nickols, et al.
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