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Plos One|November 19, 2010
Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone, Nematostella vectensisThomas Desvignes, Pierre Pontarotti, Julien BobeJournal of Molecular Evolution|February 8, 2005
Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genomeEtienne G J Danchin, Pierre PontarottiInternational Journal of Molecular Sciences|January 28, 2026
The Phylogenomic Approach Suggests That Butyrophilins Have Ligands Beyond Gamma-Delta ReceptorsLudovic Marenco, Daniel Olive, Pierre PontarottiTrends in Genetics : TIG|November 4, 2004
Towards the reconstruction of the bilaterian ancestral pre-MHC regionEtienne G J Danchin, Pierre PontarottiG3 (Bethesda, Md.)|December 1, 2021
Genome assemblies of three closely related leaf beetle species (Galerucella spp.)Xuyue Yang, Tanja Slotte, Jacques Dainat, et al.BMC Bioinformatics|September 22, 2009
PhyloPattern: regular expressions to identify complex patterns in phylogenetic treesPhilippe Gouret, Julie D Thompson, Pierre PontarottiFrontiers in Cellular and Infection Microbiology|August 25, 2012
The rhizome of life: what about metazoa?Hemalatha G Ramulu, Didier Raoult, Pierre PontarottiTrends in Microbiology|January 28, 2014
Alphaproteobacteria species as a source and target of lateral sequence transfersPhuong Thi Le, Pierre Pontarotti, Didier RaoultCurrent Opinion in Immunology|August 19, 2007
Ancestral animal genomes reconstructionVirginie Lopez Rascol, Pierre Pontarotti, Anthony LevasseurMathematical Biosciences|January 2, 2013
Choosing the best ancestral character state reconstruction methodManuela Royer-Carenzi, Pierre Pontarotti, Gilles DidierPageof 16