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Nature Protocols|July 28, 2012
A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifsMorgane Thomas-Chollier, Elodie Darbo, Carl Herrmann, et al.
Nucleic Acids Research|June 8, 2017
RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collectionsJaime Abraham Castro-Mondragon, Sébastien Jaeger, Denis Thieffry, et al.
Nucleic Acids Research|May 17, 2011
Unraveling networks of co-regulated genes on the sole basis of genome sequencesSylvain Brohée, Rekin's Janky, Fadi Abdel-Sater, et al.
Nucleic Acids Research|March 11, 2010
Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression dataAhmed Essaghir, Federica Toffalini, Laurent Knoops, et al.
Methods in Molecular Biology (Clifton, N.J.)|August 26, 2016
RSAT::Plants: Motif Discovery Within Clusters of Upstream Sequences in Plant GenomesBruno Contreras-Moreira, Jaime A Castro-Mondragon, Claire Rioualen, et al.
Molecular and Cellular Biology|February 20, 2007
Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiaePatrice Godard, Antonio Urrestarazu, Stéphan Vissers, et al.
Bioinformatics (Oxford, England)|January 24, 2018
Sequanix: a dynamic graphical interface for Snakemake workflowsDimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, et al.
Plant Physiology|March 21, 2021
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach exampleNajla Ksouri, Jaime A Castro-Mondragón, Francesc Montardit-Tarda, et al.
Nucleic Acids Research|July 1, 2011
RSAT 2011: regulatory sequence analysis toolsMorgane Thomas-Chollier, Matthieu Defrance, Alejandra Medina-Rivera, et al.
Nucleic Acids Research|October 7, 2010
Theoretical and empirical quality assessment of transcription factor-binding motifsAlejandra Medina-Rivera, Cei Abreu-Goodger, Morgane Thomas-Chollier, et al.
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