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Molecular Biology and Evolution|June 30, 2010
The prevalence of multifurcations in tree-space and their implications for tree-searchSimon Whelan, Daniel MoneySystematic Biology|September 17, 2016
Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and BenchmarkingMarcin Bogusz, Simon WhelanMolecular Biology and Evolution|January 23, 2019
Physicochemical Amino Acid Properties Better Describe Substitution Rates in Large PopulationsClaudia C Weber, Simon WhelanMolecular Biology and Evolution|November 13, 2012
Class of multiple sequence alignment algorithm affects genomic analysisBenjamin P Blackburne, Simon WhelanMethods in Molecular Biology (Clifton, N.J.)|November 30, 2016
Inferring TreesSimon Whelan, David A MorrisonBioinformatics (Oxford, England)|December 27, 2011
Measuring the distance between multiple sequence alignmentsBenjamin P Blackburne, Simon WhelanBioinformatics (Oxford, England)|June 6, 2018
PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequencesSimon Whelan, Iker Irisarri, Fabien BurkiJournal of Biomedical Informatics|October 18, 2005
Phylogenetics by likelihood: evolutionary modeling as a tool for understanding the genomeCarolin Kosiol, Lee Bofkin, Simon WhelanMethods in Molecular Biology (Clifton, N.J.)|December 8, 2020
Automated Removal of Non-homologous Sequence Stretches with PREQUALIker Irisarri, Fabien Burki, Simon WhelanDevelopmental Dynamics : an Official Publication of the American Association of Anatomists|October 29, 2010
Dynamic expression patterns of 6-O endosulfatases during zebrafish development suggest a subfunctionalisation event for sulf2Bushra Gorsi, Simon Whelan, Sally E StringerPageof 6