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BMC Genomics|April 30, 2010
Genomic organization of eukaryotic tRNAsClara Bermudez-Santana, Camille Stephan-Otto Attolini, Toralf Kirsten, et al.Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution|January 23, 2018
Toward a mechanistic explanation of phenotypic evolution: The need for a theory of theory integrationManfred D Laubichler, Sonja J Prohaska, Peter F StadlerOrigins of Life and Evolution of the Biosphere : the Journal of the International Society for the Study of the Origin of Life|February 11, 2012
"Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexityIrma Lozada-Chávez, Peter F Stadler, Sonja J ProhaskaGenes|April 9, 2014
Evolution and quantitative comparison of genome-wide protein domain distributionsArli A Parikesit, Peter F Stadler, Sonja J ProhaskaJournal of Theoretical Biology|March 23, 2010
Innovation in gene regulation: the case of chromatin computationSonja J Prohaska, Peter F Stadler, David C KrakauerBMC Evolutionary Biology|August 21, 2015
Evolution of the unspliced transcriptomeJan Engelhardt, Peter F StadlerAlgorithms for Molecular Biology : AMB|May 26, 2006
Multiple sequence alignment with user-defined anchor pointsBurkhard Morgenstern, Sonja J Prohaska, Dirk Pöhler, et al.BMC Bioinformatics|December 24, 2015
Algebraic Dynamic Programming over general data structuresChristian Höner zu Siederdissen, Sonja J Prohaska, Peter F StadlerAlgorithms for Molecular Biology : AMB|February 26, 2016
The paralog-to-contig assignment problem: high quality gene models from fragmented assembliesHenrike Indrischek, Nicolas Wieseke, Peter F Stadler, et al.Molecular Biology and Evolution|July 30, 2004
Divergence of conserved non-coding sequences: rate estimates and relative rate testsGünter P Wagner, Claudia Fried, Sonja J Prohaska, et al.Pageof 47