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BMC Genomics|December 4, 2017
Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plotsYuki Kato, Jan Gorodkin, Jakob Hull HavgaardBioinformatics (Oxford, England)|October 9, 2018
Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profilesXiaoyong Pan, Lars Juhl Jensen, Jan GorodkinBMC Bioinformatics|November 19, 2008
RNAalifold: improved consensus structure prediction for RNA alignmentsStephan H Bernhart, Ivo L Hofacker, Sebastian Will, et al.Frontiers in Bioinformatics|October 28, 2022
Caveats to Deep Learning Approaches to RNA Secondary Structure PredictionChristoph Flamm, Julia Wielach, Michael T Wolfinger, et al.Methods (San Diego, Calif.)|April 17, 2018
In silico design of ligand triggered RNA switchesSven Findeiß, Stefan Hammer, Michael T Wolfinger, et al.Algorithms for Molecular Biology : AMB|May 26, 2006
Partition function and base pairing probabilities of RNA heterodimersStephan H Bernhart, Hakim Tafer, Ulrike Mückstein, et al.Molecular Biology and Evolution|June 21, 2008
Arthropod 7SK RNAAndreas R Gruber, Carsten Kilgus, Axel Mosig, et al.Nucleic Acids Research|June 28, 2005
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif searchJakob H Havgaard, Rune B Lyngsø, Jan GorodkinFrontiers in Research Metrics and Analytics|August 16, 2024
Patent data-driven analysis of literature associations with changing innovation trendsAdrian Sven Geissler, Jan Gorodkin, Stefan Ernst SeemannPlos Computational Biology|May 21, 2015
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNAChristopher A Lavender, Ronny Lorenz, Ge Zhang, et al.Pageof 25