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Current Protocols in Bioinformatics|June 5, 2009
RNA secondary structure analysis using the Vienna RNA packageIvo L HofackerCurrent Protocols in Bioinformatics|April 23, 2008
RNA secondary structure analysis using the Vienna RNA packageIvo L HofackerMethods in Molecular Biology (Clifton, N.J.)|March 19, 2014
Energy-directed RNA structure predictionIvo L HofackerNucleic Acids Research|January 22, 2017
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targetsFerhat Alkan, Anne Wenzel, Oana Palasca, et al.Methods in Molecular Biology (Clifton, N.J.)|November 13, 2007
RNA consensus structure prediction with RNAalifoldIvo L HofackerNucleic Acids Research|August 19, 2015
Optimizing RNA structures by sequence extensions using RNAcopNikolai Hecker, Mikkel Christensen-Dalsgaard, Stefan E Seemann, et al.Journal of Molecular Biology|August 18, 2004
Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomicsStefan Washietl, Ivo L HofackerCurrent Protocols in Bioinformatics|April 23, 2008
Identifying structural noncoding RNAs using RNAzStefan Washietl, Ivo L HofackerMethods in Molecular Biology (Clifton, N.J.)|October 19, 2013
Predicting RNA structure: advances and limitationsIvo L Hofacker, Ronny LorenzPageof 25