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Bioinformatics (Oxford, England)|December 22, 2005
Local RNA base pairing probabilities in large sequencesStephan H Bernhart, Ivo L Hofacker, Peter F Stadler
Scientific Reports|July 14, 2015
Differential and coherent processing patterns from small RNAsSachin Pundhir, Jan Gorodkin
Nucleic Acids Research|April 25, 2007
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structuresAndreas R Gruber, Richard Neuböck, Ivo L Hofacker, et al.
BMC Genomics|July 15, 2010
Bcheck: a wrapper tool for detecting RNase P RNA genesDilmurat Yusuf, Manja Marz, Peter F Stadler, et al.
Bioinformatics (Oxford, England)|March 21, 2014
Basin Hopping Graph: a computational framework to characterize RNA folding landscapesMarcel Kucharík, Ivo L Hofacker, Peter F Stadler, et al.
Nucleic Acids Research|July 18, 2024
Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS dataBernhard C Thiel, Giovanni Bussi, Simón Poblete, et al.
Frontiers in Genetics|July 23, 2013
MicroRNA discovery by similarity search to a database of RNA-seq profilesSachin Pundhir, Jan Gorodkin
Nucleic Acids Research|June 16, 2011
RNApredator: fast accessibility-based prediction of sRNA targetsFlorian Eggenhofer, Hakim Tafer, Peter F Stadler, et al.
Nucleic Acids Research|January 31, 2012
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure predictionStefan Washietl, Ivo L Hofacker, Peter F Stadler, et al.
RNA (New York, N.Y.)|December 10, 2023
3D feasibility of 2D RNA-RNA interaction paths by stepwise folding simulationsIrene K Beckmann, Maria Waldl, Sebastian Will, et al.
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