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Bioinformatics (Oxford, England)|April 10, 2004
Alignment of RNA base pairing probability matricesIvo L Hofacker, Stephan H F Bernhart, Peter F StadlerThe Journal of General Virology|April 24, 2004
Conserved RNA secondary structures in Flaviviridae genomesCaroline Thurner, Christina Witwer, Ivo L Hofacker, et al.Bioinformatics (Oxford, England)|October 3, 2015
Pseudoknots in RNA folding landscapesMarcel Kucharík, Ivo L Hofacker, Peter F Stadler, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|September 11, 2015
Product Grammars for Alignment and FoldingChristian Höner Zu Siederdissen, Ivo L Hofacker, Peter F StadlerMethods (San Diego, Calif.)|April 12, 2016
Predicting RNA secondary structures from sequence and probing dataRonny Lorenz, Michael T Wolfinger, Andrea Tanzer, et al.Methods in Molecular Biology (Clifton, N.J.)|March 19, 2014
De novo discovery of structured ncRNA motifs in genomic sequencesWalter L Ruzzo, Jan GorodkinBioinformatics (Oxford, England)|April 28, 2017
RNAblueprint: flexible multiple target nucleic acid sequence designStefan Hammer, Birgit Tschiatschek, Christoph Flamm, et al.Bioinformatics (Oxford, England)|February 4, 2021
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapesGregor Entzian, Ivo L Hofacker, Yann Ponty, et al.Journal of Bioinformatics and Computational Biology|December 21, 2019
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target predictionRick Gelhausen, Sebastian Will, Ivo L Hofacker, et al.BMC Bioinformatics|February 28, 2008
Strategies for measuring evolutionary conservation of RNA secondary structuresAndreas R Gruber, Stephan H Bernhart, Ivo L Hofacker, et al.Pageof 25