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Methods in Molecular Biology (Clifton, N.J.)|March 19, 2014
RNA structural alignments, part I: Sankoff-based approaches for structural alignmentsJakob Hull Havgaard, Jan GorodkinBioinformatics (Oxford, England)|March 20, 2018
CMV: visualization for RNA and protein family models and their comparisonsFlorian Eggenhofer, Ivo L Hofacker, Rolf Backofen, et al.F1000Research|May 14, 2019
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elementsBernhard C Thiel, Irene K Beckmann, Peter Kerpedjiev, et al.BMC Bioinformatics|February 16, 2006
Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovationChristian V Forst, Christoph Flamm, Ivo L Hofacker, et al.BMC Bioinformatics|June 30, 2005
Multiple sequence alignments of partially coding nucleic acid sequencesRoman R Stocsits, Ivo L Hofacker, Claudia Fried, et al.Nucleic Acids Research|November 26, 2015
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elementsJörg Fallmann, Vitaly Sedlyarov, Andrea Tanzer, et al.Algorithms for Molecular Biology : AMB|July 29, 2023
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA packageHua-Ting Yao, Ronny Lorenz, Ivo L Hofacker, et al.Nucleic Acids Research|November 13, 2010
AREsite: a database for the comprehensive investigation of AU-rich elementsAndreas R Gruber, Jörg Fallmann, Franz Kratochvill, et al.IEEE Transactions on Visualization and Computer Graphics|November 4, 2006
Visualization of barrier tree sequencesChristian Heine, Gerik Scheuermann, Christoph Flamm, et al.Bioinformatics (Oxford, England)|May 20, 2011
Fast accessibility-based prediction of RNA-RNA interactionsHakim Tafer, Fabian Amman, Florian Eggenhofer, et al.Pageof 25