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Plos One|July 2, 2019
Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decompositionJaron Thompson, Renee Johansen, John Dunbar, et al.Biorxiv : the Preprint Server for Biology|July 17, 2025
Physics-constrained neural ordinary differential equation models to discover and predict microbial community dynamicsJaron Thompson, Bryce M Connors, Victor M Zavala, et al.Proceedings of the National Academy of Sciences of the United States of America|March 27, 2026
Physics-constrained neural ordinary differential equation models to discover and predict microbial community dynamicsJaron Thompson, Bryce M Connors, Victor M Zavala, et al.Nature Ecology & Evolution|January 5, 2023
Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbationsErin Ostrem Loss, Jaron Thompson, Pak Lun Kevin Cheung, et al.Elife|June 23, 2022
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamicsMayank Baranwal, Ryan L Clark, Jaron Thompson, et al.Cell Systems|December 13, 2023
Control points for design of taxonomic composition in synthetic human gut communitiesBryce M Connors, Jaron Thompson, Sarah Ertmer, et al.Biorxiv : the Preprint Server for Biology|April 25, 2024
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapesJordy Evan Sulaiman, Jaron Thompson, Yili Qian, et al.Nature Communications|August 28, 2024
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapesJordy Evan Sulaiman, Jaron Thompson, Yili Qian, et al.Biorxiv : the Preprint Server for Biology|July 29, 2024
Human gut microbiota interactions shape the long-term growth dynamics and evolutionary adaptations of Clostridioides difficileJordy Evan Sulaiman, Jaron Thompson, Pak Lun Kevin Cheung, et al.Biorxiv : the Preprint Server for Biology|November 21, 2023
Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathwayYiyi Liu, Yu-Yu Cheng, Jaron Thompson, et al.Pageof 2