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Bioinformatics (Oxford, England)|May 18, 2021
NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairsJasmin Hafner, Vassily HatzimanikatisBiotechnology Journal|November 30, 2016
Reconstruction of biological pathways and metabolic networks from in silico labeled metabolitesNoushin Hadadi, Jasmin Hafner, Keng Cher Soh, et al.Nature Communications|March 24, 2022
Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASxHoma MohammadiPeyhani, Jasmin Hafner, Anastasia Sveshnikova, et al.ACS Synthetic Biology|May 19, 2020
Updated ATLAS of Biochemistry with New Metabolites and Improved Enzyme Prediction PowerJasmin Hafner, Homa MohammadiPeyhani, Anastasia Sveshnikova, et al.Nature Communications|March 20, 2021
A computational workflow for the expansion of heterologous biosynthetic pathways to natural product derivativesJasmin Hafner, James Payne, Homa MohammadiPeyhani, et al.ACS Synthetic Biology|July 13, 2016
ATLAS of Biochemistry: A Repository of All Possible Biochemical Reactions for Synthetic Biology and Metabolic Engineering StudiesNoushin Hadadi, Jasmin Hafner, Adrian Shajkofci, et al.Elife|August 3, 2021
NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolismHoma MohammadiPeyhani, Anush Chiappino-Pepe, Kiandokht Haddadi, et al.Proceedings of the National Academy of Sciences of the United States of America|November 7, 2022
A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactionsEvangelia Vayena, Anush Chiappino-Pepe, Homa MohammadiPeyhani, et al.Trends in Biotechnology|July 22, 2010
Production of biofuels and biochemicals: in need of an ORACLELjubisa Miskovic, Vassily HatzimanikatisProceedings of the National Academy of Sciences of the United States of America|February 19, 2021
Emergence of diauxie as an optimal growth strategy under resource allocation constraints in cellular metabolismPierre Salvy, Vassily HatzimanikatisPageof 14