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Nature Methods|August 7, 2019
Joint profiling of DNA methylation and chromatin architecture in single cellsGuoqiang Li, Yaping Liu, Yanxiao Zhang, et al.Genome Research|November 9, 2007
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAsJ Graham Ruby, Alexander Stark, Wendy K Johnston, et al.Genes & Development|February 27, 2007
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryoJulia Zeitlinger, Robert P Zinzen, Alexander Stark, et al.Cell|March 10, 2007
Discrete small RNA-generating loci as master regulators of transposon activity in DrosophilaJulius Brennecke, Alexei A Aravin, Alexander Stark, et al.Nucleic Acids Research|July 27, 2025
Proteogenomics-enabled discovery of novel small open reading frame (sORF)-encoded polypeptides in human and mouse tissuesMei Yang, Yuting Xie, Lingshuo Wang, et al.Communications Biology|May 27, 2021
NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell dataLiang He, Jose Davila-Velderrain, Tomokazu S Sumida, et al.NAR Genomics and Bioinformatics|December 31, 2019
Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translationLaura Martinez-Gomez, Federico Abascal, Irwin Jungreis, et al.Nature Communications|April 8, 2017
Multi-scale chromatin state annotation using a hierarchical hidden Markov modelEugenio Marco, Wouter Meuleman, Jialiang Huang, et al.Wiley Interdisciplinary Reviews. RNA|September 20, 2012
Computational analysis of noncoding RNAsStefan Washietl, Sebastian Will, David A Hendrix, et al.Biorxiv : the Preprint Server for Biology|November 14, 2023
Integrating single-cell RNA-seq datasets with substantial batch effectsKarin Hrovatin, Amir Ali Moinfar, Luke Zappia, et al.Pageof 41