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BMC Bioinformatics|April 7, 2006
STEM: a tool for the analysis of short time series gene expression dataJason Ernst, Ziv Bar-JosephNature Communications|May 4, 2021
Learning a genome-wide score of human-mouse conservation at the functional genomics levelSoo Bin Kwon, Jason ErnstGenome Biology|August 16, 2018
Investigating enhancer evolution with massively parallel reporter assaysSoo Bin Kwon, Jason ErnstBiorxiv : the Preprint Server for Biology|July 28, 2023
Integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell typesTevfik Umut Dincer, Jason ErnstGenome Biology|May 9, 2025
ChromActivity: integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell typesTevfik Umut Dincer, Jason ErnstCommunications Biology|June 4, 2021
Single-nucleotide conservation state annotation of the SARS-CoV-2 genomeSoo Bin Kwon, Jason ErnstBiorxiv : the Preprint Server for Biology|July 24, 2020
Single-nucleotide conservation state annotation of the SARS-CoV-2 genomeSoo Bin Kwon, Jason ErnstBioinformatics (Oxford, England)|January 20, 2026
Learning a Pairwise Epigenomic and Transcription Factor Binding Association Score Across the Human GenomeSoo Bin Kwon, Jason ErnstAnalytical Chemistry|March 25, 2016
Improved Identification and Analysis of Small Open Reading Frame Encoded PolypeptidesJiao Ma, Jolene K Diedrich, Irwin Jungreis, et al.Nature Communications|September 17, 2020
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasetsEmily Berger, Deniz Yorukoglu, Lillian Zhang, et al.Pageof 41