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Nature|March 9, 2004
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiaeManolis Kellis, Bruce W Birren, Eric S Lander
Genome Research|November 9, 2007
Reliable prediction of regulator targets using 12 Drosophila genomesPouya Kheradpour, Alexander Stark, Sushmita Roy, et al.
Arxiv|March 13, 2026
Greater than the Sum of Its Parts: Building Substructure into Protein Encoding ModelsRobert Calef, Arthur Liang, Manolis Kellis, et al.
Bioinformatics (Oxford, England)|June 13, 2012
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and lossMukul S Bansal, Eric J Alm, Manolis Kellis
Molecular Biology and Evolution|September 9, 2011
Evolution at the subgene level: domain rearrangements in the Drosophila phylogenyYi-Chieh Wu, Matthew D Rasmussen, Manolis Kellis
Nature Biotechnology|July 16, 2013
Network deconvolution as a general method to distinguish direct dependencies in networksSoheil Feizi, Daniel Marbach, Muriel Médard, et al.
Bioinformatics (Oxford, England)|July 6, 2016
SwiSpot: modeling riboswitches by spotting out switching sequencesMarco Barsacchi, Eva Maria Novoa, Manolis Kellis, et al.
Proceedings of the National Academy of Sciences of the United States of America|January 18, 2008
The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplicationAviva Presser, Michael B Elowitz, Manolis Kellis, et al.
Nucleic Acids Research|July 3, 2019
Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorizationDianbo Liu, Jose Davila-Velderrain, Zhizhuo Zhang, et al.
Molecular Biology and Evolution|June 21, 2019
Elucidation of Codon Usage Signatures across the Domains of LifeEva Maria Novoa, Irwin Jungreis, Olivier Jaillon, et al.
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