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Bioinformatics (Oxford, England)|April 25, 2018
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and lossMukul S Bansal, Manolis Kellis, Misagh Kordi, et al.ACM Transactions on Knowledge Discovery From Data|August 24, 2010
Motif Discovery in Physiological Datasets: A Methodology for Inferring Predictive ElementsZeeshan Syed, Collin Stultz, Manolis Kellis, et al.Plos One|February 23, 2011
Error and error mitigation in low-coverage genome assembliesMelissa J Hubisz, Michael F Lin, Manolis Kellis, et al.Nature Communications|May 29, 2024
A polygenic score method boosted by non-additive modelsRikifumi Ohta, Yosuke Tanigawa, Yuta Suzuki, et al.NPJ Digital Medicine|November 21, 2025
The hidden risk of round numbers and sharp thresholds in clinical practiceBenjamin J Lengerich, Rich Caruana, Mark E Nunnally, et al.Biorxiv : the Preprint Server for Biology|November 26, 2025
CONCERT predicts niche-aware perturbation responses in spatial transcriptomicsXiang Lin, Zhenglun Kong, Soumya Ghosh, et al.Nucleic Acids Research|January 31, 2012
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure predictionStefan Washietl, Ivo L Hofacker, Peter F Stadler, et al.Nature|December 17, 2013
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivoSilvi Rouskin, Meghan Zubradt, Stefan Washietl, et al.Nature|May 16, 2003
Sequencing and comparison of yeast species to identify genes and regulatory elementsManolis Kellis, Nick Patterson, Matthew Endrizzi, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 3, 2004
Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discoveryManolis Kellis, Nick Patterson, Bruce Birren, et al.Pageof 40