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Bioinformatics (Oxford, England)|December 7, 2014
Improved gene tree error correction in the presence of horizontal gene transferMukul S Bansal, Yi-Chieh Wu, Eric J Alm, et al.Systematic Biology|September 6, 2012
TreeFix: statistically informed gene tree error correction using species treesYi-Chieh Wu, Matthew D Rasmussen, Mukul S Bansal, et al.Bioinformatics (Oxford, England)|June 17, 2014
Pareto-optimal phylogenetic tree reconciliationRan Libeskind-Hadas, Yi-Chieh Wu, Mukul S Bansal, et al.Genome Research|December 7, 2013
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent treesYi-Chieh Wu, Matthew D Rasmussen, Mukul S Bansal, et al.Plos Computational Biology|April 19, 2008
Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomesMichael F Lin, Ameya N Deoras, Matthew D Rasmussen, et al.Nature Methods|March 8, 2016
Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseasesDaniel Marbach, David Lamparter, Gerald Quon, et al.Biorxiv : the Preprint Server for Biology|May 25, 2026
Dissecting Alzheimer's disease heterogeneity by cross-trait polygenic predictionWilliam F Li, Nabil Mohammed, David A Bennett, et al.Briefings in Bioinformatics|May 6, 2024
Single-cell RNA sequencing data imputation using bi-level feature propagationJunseok Lee, Sukwon Yun, Yeongmin Kim, et al.Nature|March 29, 2011
Mapping and analysis of chromatin state dynamics in nine human cell typesJason Ernst, Pouya Kheradpour, Tarjei S Mikkelsen, et al.Nature|February 4, 2021
Regulatory genomic circuitry of human disease loci by integrative epigenomicsCarles A Boix, Benjamin T James, Yongjin P Park, et al.Pageof 40