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Cell Systems|January 19, 2023
The in silico lab: Improving academic code using lessons from biologyJason Y Cain, Jessica S Yu, Neda BagheriBioinformatics (Oxford, England)|March 6, 2024
Incorporating temporal information during feature engineering bolsters emulation of spatio-temporal emergenceJason Y Cain, Jacob I Evarts, Jessica S Yu, et al.Plos Computational Biology|March 8, 2024
Model design choices impact biological insight: Unpacking the broad landscape of spatial-temporal model development decisionsJessica S Yu, Neda BagheriCell Systems|June 17, 2021
Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based modelJessica S Yu, Neda BagheriFrontiers in Bioengineering and Biotechnology|June 30, 2020
Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic MicroenvironmentsJessica S Yu, Neda BagheriCurrent Opinion in Biotechnology|April 27, 2016
Multi-class and multi-scale models of complex biological phenomenaJessica S Yu, Neda BagheriCurrent Opinion in Biotechnology|March 1, 2022
Fighting fire with fire: deploying complexity in computational modeling to effectively characterize complex biological systemsAlexis N Prybutok, Jason Y Cain, Joshua N Leonard, et al.Bioinformatics (Oxford, England)|April 2, 2019
Network inference performance complexity: a consequence of topological, experimental and algorithmic determinantsJoseph J Muldoon, Jessica S Yu, Mohammad-Kasim Fassia, et al.Frontiers in Molecular Biosciences|July 29, 2022
Mapping CAR T-Cell Design Space Using Agent-Based ModelsAlexis N Prybutok, Jessica S Yu, Joshua N Leonard, et al.Protein Engineering, Design & Selection : PEDS|April 29, 2017
Modulating and evaluating receptor promiscuity through directed evolution and modelingSarah C Stainbrook, Jessica S Yu, Michael P Reddick, et al.Pageof 7