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Plos Computational Biology|June 6, 2019
Modern technologies and algorithms for scaffolding assembled genomesJay Ghurye, Mihai PopBMC Genomics|July 14, 2017
Scaffolding of long read assemblies using long range contact informationJay Ghurye, Mihai Pop, Sergey Koren, et al.Genome Biology|August 28, 2019
MetaCarvel: linking assembly graph motifs to biological variantsJay Ghurye, Todd Treangen, Marcus Fedarko, et al.Gigascience|June 4, 2019
A chromosome-scale assembly of the major African malaria vector Anopheles funestusJay Ghurye, Sergey Koren, Scott T Small, et al.Plos Computational Biology|August 22, 2019
Integrating Hi-C links with assembly graphs for chromosome-scale assemblyJay Ghurye, Arang Rhie, Brian P Walenz, et al.Briefings in Bioinformatics|October 3, 2017
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomesNathan D Olson, Todd J Treangen, Christopher M Hill, et al.Bioinformatics (Oxford, England)|April 1, 2021
A critical assessment of gene catalogs for metagenomic analysisSeth Commichaux, Nidhi Shah, Jay Ghurye, et al.BMC Genomics|December 21, 2019
New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomesRuijie Liu, Wai Yee Low, Rick Tearle, et al.Nature Biotechnology|December 8, 2020
Chromosome-scale, haplotype-resolved assembly of human genomesShilpa Garg, Arkarachai Fungtammasan, Andrew Carroll, et al.Nature Communications|May 1, 2020
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattleWai Yee Low, Rick Tearle, Ruijie Liu, et al.Pageof 2