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Bioinformatics (Oxford, England)|August 17, 2010
ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experimentsAlexander Lachmann, Huilei Xu, Jayanth Krishnan, et al.
Microbiology Spectrum|September 26, 2025
PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM dataK Jayanth Krishnan, Ying Hefner, Richard Szubin, et al.
Cell|April 11, 2025
Extracellular respiration is a latent energy metabolism in Escherichia coliBiki Bapi Kundu, Jayanth Krishnan, Richard Szubin, et al.
Genome Research|April 7, 2017
Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionVladimir Despic, Mario Dejung, Mengting Gu, et al.
Molecular Biology and Evolution|November 12, 2024
Diversity of Transcriptional Regulatory Adaptation in E. coliChristopher Dalldorf, Ying Hefner, Richard Szubin, et al.
Plos Pathogens|December 8, 2025
Rare metabolic gene essentiality is a determinant of microniche adaptation in Eschherichia coliOmid Ardalani, Patrick V Phaneuf, Jayanth Krishnan, et al.
Msystems|April 1, 2026
Multi-strain analysis of Pseudomonas putida reveals the metabolic and genetic diversity of the speciesJoshua Mueller, Jayanth Krishnan, Qixing Wei, et al.
Proceedings of the National Academy of Sciences of the United States of America|July 1, 2026
A systems-level atlas of carbon-response transcriptional states in Escherichia coliJongoh Shin, Arjun Patel, Xuwen A Lou, et al.
Biorxiv : the Preprint Server for Biology|December 3, 2025
Multi-strain Analysis of Pseudomonas putida Reveals the Metabolic and Genetic Diversity of the SpeciesJoshua Mueller, Kalpathy Jayanth Krishnan, Qixing Wei, et al.
Nucleic Acids Research|November 4, 2024
iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasetsEdward A Catoiu, Jayanth Krishnan, Gaoyuan Li, et al.
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