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Methods in Molecular Biology (Clifton, N.J.)|June 25, 2022
Variant Calling from RNA-seq Data Using the GATK Joint Genotyping WorkflowJean-Simon Brouard, Nathalie BissonnetteJournal of Animal Science and Biotechnology|June 29, 2019
The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experimentsJean-Simon Brouard, Flavio Schenkel, Andrew Marete, et al.BMC Genetics|April 7, 2017
Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputationJean-Simon Brouard, Brian Boyle, Eveline M Ibeagha-Awemu, et al.BMC Genomics|March 8, 2021
Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle 'in vitro' experimentally infected macrophagesOlivier Ariel, Jean-Simon Brouard, Andrew Marete, et al.Journal of Dairy Science|November 13, 2017
Short communication: Genetic association of variations in the osteopontin gene (SPP1) with lactation persistency in dairy cattleNathalie BissonnetteGenome Biology and Evolution|May 7, 2011
The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the chaetophoralesJean-Simon Brouard, Christian Otis, Claude Lemieux, et al.Peerj|November 5, 2016
Proliferation of group II introns in the chloroplast genome of the green alga Oedocladium carolinianum (Chlorophyceae)Jean-Simon Brouard, Monique Turmel, Christian Otis, et al.BMC Genomics|June 19, 2008
Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transferJean-Simon Brouard, Christian Otis, Claude Lemieux, et al.Genome Biology and Evolution|July 14, 2010
The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the ChlorophyceaeJean-Simon Brouard, Christian Otis, Claude Lemieux, et al.Journal of Phycology|April 5, 2016
DEEP DIVISION IN THE CHLOROPHYCEAE (CHLOROPHYTA) REVEALED BY CHLOROPLAST PHYLOGENOMIC ANALYSES(1)Monique Turmel, Jean-Simon Brouard, Cédric Gagnon, et al.Pageof 6