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Biochemistry|October 10, 2015
Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift ConstraintsJonathan L Chen, Stanislav Bellaousov, Jason D Tubbs, et al.
Elife|June 13, 2022
Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probingJayashree Kumar, Lela Lackey, Justin M Waldern, et al.
Cellular and Molecular Life Sciences : CMLS|May 2, 2023
In vivo secondary structural analysis of Influenza A virus genomic RNABarbara Mirska, Tomasz Woźniak, Dagny Lorent, et al.
Journal of Chemical Theory and Computation|December 7, 2010
An RNA molecular switch: Intrinsic flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN internal loops studied by molecular dynamics methodsKamila Réblová, Zora Střelcová, Petr Kulhánek, et al.
Journal of Chemical Theory and Computation|November 28, 2015
An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics MethodsKamila Réblová, Zora Střelcová, Petr Kulhánek, et al.
Molecular Therapy. Nucleic Acids|April 2, 2025
Improving the potency prediction for chemically modified siRNAs through insights from molecular modeling of individual sequence positionsEvgenii Kliuchnikov, Farkhad Maksudov, Jeffrey Zuber, et al.
RNA Biology|April 28, 2011
Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolorMichael-Paul Vockenhuber, Cynthia M Sharma, Michaela G Statt, et al.
Plos Biology|May 2, 2008
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological statesKevin A Wilkinson, Robert J Gorelick, Suzy M Vasa, et al.
Nucleic Acids Research|July 15, 2015
Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataYang Wu, Binbin Shi, Xinqiang Ding, et al.
Nature Communications|October 20, 2018
mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distancesWan-Jung C Lai, Mohammad Kayedkhordeh, Erica V Cornell, et al.
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