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BMC Bioinformatics|March 17, 2010
RNAstructure: software for RNA secondary structure prediction and analysisJessica S Reuter, David H MathewsJournal of Computational Chemistry|April 22, 2011
Automated RNA tertiary structure prediction from secondary structure and low-resolution restraintsMatthew G Seetin, David H MathewsAlgorithms for Molecular Biology : AMB|November 5, 2013
Accelerating calculations of RNA secondary structure partition functions using GPUsHarry A Stern, David H MathewsNucleic Acids Research|November 23, 2014
Dynalign II: common secondary structure prediction for RNA homologs with domain insertionsYinghan Fu, Gaurav Sharma, David H MathewsNucleic Acids Research|December 6, 2011
Statistical evaluation of improvement in RNA secondary structure predictionZhenjiang Xu, Anthony Almudevar, David H MathewsBiophysical Journal|July 25, 2017
Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping DataZhen Tan, Gaurav Sharma, David H MathewsJournal of Chemical Theory and Computation|November 1, 2012
The Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix FormationAleksandar Spasic, John Serafini, David H MathewsBioinformatics (Oxford, England)|July 7, 2026
Probabilistic RNA designability via interpretable ensemble approximation and dynamic decompositionTianshuo Zhou, David H Mathews, Liang HuangBMC Bioinformatics|April 21, 2007
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in DynalignArif Ozgun Harmanci, Gaurav Sharma, David H MathewsCurrent Protocols in Nucleic Acid Chemistry|April 23, 2008
RNA secondary structure predictionDavid H Mathews, Douglas H Turner, Michael ZukerPageof 20