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Wiley Interdisciplinary Reviews. RNA|August 18, 2017
Physics-based all-atom modeling of RNA energetics and structureLouis G Smith, Jianbo Zhao, David H Mathews, et al.Nucleic Acids Research|November 28, 2017
Modeling RNA secondary structure folding ensembles using SHAPE mapping dataAleksandar Spasic, Sarah M Assmann, Philip C Bevilacqua, et al.Bioinformatics (Oxford, England)|March 30, 2019
Determining parameters for non-linear models of multi-loop free energy changeMax Ward, Hongying Sun, Amitava Datta, et al.Nature Structural & Molecular Biology|December 8, 2009
A sequence similar to tRNA 3 Lys gene is embedded in HIV-1 U3-R and promotes minus-strand transferDorota Piekna-Przybylska, Laura DiChiacchio, David H Mathews, et al.Journal of Molecular Biology|May 19, 2022
A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-MethyladenosineMarta Szabat, Martina Prochota, Ryszard Kierzek, et al.Nucleic Acids Research|April 27, 2013
RNAstructure: Web servers for RNA secondary structure prediction and analysisStanislav Bellaousov, Jessica S Reuter, Matthew G Seetin, et al.Nucleic Acids Research|November 19, 2022
LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2He Zhang, Sizhen Li, Liang Zhang, et al.Biorxiv : the Preprint Server for Biology|January 5, 2021
LazySampling and LinearSampling: Fast Stochastic Sampling of RNA Secondary Structure with Applications to SARS-CoV-2He Zhang, Liang Zhang, Sizhen Li, et al.Journal of Chemical Theory and Computation|August 20, 2014
Influence of Sequence and Covalent Modifications on Yeast tRNA DynamicsXiaoju Zhang, Ross C Walker, Eric M Phizicky, et al.Biophysical Journal|November 20, 2025
NMR and molecular dynamics demonstrate the RNA internal loop GAGU is dynamic and adjacent basepairs determine conformational preferenceOlayinka Akinyemi, Scott D Kennedy, James P McSally, et al.Pageof 20