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Bioinformatics Advances|August 2, 2024
Mining drug-target interactions from biomedical literature using chemical and gene descriptions-based ensemble transformer modelJehad Aldahdooh, Ziaurrehman Tanoli, Jing Tang
BMC Bioinformatics|June 21, 2022
Using BERT to identify drug-target interactions from whole PubMedJehad Aldahdooh, Markus Vähä-Koskela, Jing Tang, et al.
Scientific Reports|December 8, 2022
DrugRepo: a novel approach to repurposing drugs based on chemical and genomic featuresYinyin Wang, Jehad Aldahdooh, Yingying Hu, et al.
Genomics, Proteomics & Bioinformatics|January 27, 2022
SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening DatasetsShuyu Zheng, Wenyu Wang, Jehad Aldahdooh, et al.
Nucleic Acids Research|June 1, 2021
DrugComb update: a more comprehensive drug sensitivity data repository and analysis portalShuyu Zheng, Jehad Aldahdooh, Tolou Shadbahr, et al.
Biomolecules|June 7, 2020
Can We Assume the Gene Expression Profile as a Proxy for Signaling Network Activity?Mehran Piran, Reza Karbalaei, Mehrdad Piran, et al.
Nature Communications|June 3, 2021
RNA atlas of human bacterial pathogens uncovers stress dynamics linked to infectionKemal Avican, Jehad Aldahdooh, Matteo Togninalli, et al.
Nucleic Acids Research|May 9, 2019
DrugComb: an integrative cancer drug combination data portalBulat Zagidullin, Jehad Aldahdooh, Shuyu Zheng, et al.
Briefings in Bioinformatics|September 2, 2021
Minimal information for chemosensitivity assays (MICHA): a next-generation pipeline to enable the FAIRification of drug screening experimentsZiaurrehman Tanoli, Jehad Aldahdooh, Farhan Alam, et al.
Biorxiv : the Preprint Server for Biology|December 10, 2020
Minimal information for Chemosensitivity assays (MICHA): A next-generation pipeline to enable the FAIRification of drug screening experimentsZiaurrehman Tanoli, Jehad Aldahdooh, Farhan Alam, et al.
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