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BMC Bioinformatics|December 29, 2020
Dependency parsing of biomedical text with BERTJenna Kanerva, Filip Ginter, Sampo PyysaloInternational Journal of Medical Informatics|March 31, 2009
Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: method and clinical applicationFilip Ginter, Hanna Suominen, Sampo Pyysalo, et al.International Journal of Medical Informatics|March 21, 2009
Towards automated processing of clinical Finnish: sublanguage analysis and a rule-based parserVeronika Laippala, Filip Ginter, Sampo Pyysalo, et al.Scientific Data|August 11, 2025
Annotated textual dataset PV600 of perovskite bandgaps for information extraction from literatureMatilda Sipilä, Farrokh Mehryary, Sampo Pyysalo, et al.Bioinformatics (Oxford, England)|June 10, 2010
Complex event extraction at PubMed scaleJari Björne, Filip Ginter, Sampo Pyysalo, et al.BMC Bioinformatics|May 9, 2008
Comparative analysis of five protein-protein interaction corporaSampo Pyysalo, Antti Airola, Juho Heimonen, et al.International Journal of Medical Informatics|August 16, 2005
Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactionsSampo Pyysalo, Filip Ginter, Tapio Pahikkala, et al.BMC Bioinformatics|December 17, 2008
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learningAntti Airola, Sampo Pyysalo, Jari Björne, et al.BMC Bioinformatics|February 13, 2007
BioInfer: a corpus for information extraction in the biomedical domainSampo Pyysalo, Filip Ginter, Juho Heimonen, et al.Behavior Research Methods|October 15, 2025
TCBLex - A lexical database of Finnish literary texts for childrenTapio Nojonen, Kiia Korsu, Filip Ginter, et al.Pageof 7