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BMC Bioinformatics|May 23, 2018
Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approachesGamal Crichton, Yufan Guo, Sampo Pyysalo, et al.BMC Bioinformatics|December 1, 2006
Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approachesSampo Pyysalo, Tapio Salakoski, Sophie Aubin, et al.BMC Bioinformatics|January 18, 2013
BioCause: Annotating and analysing causality in the biomedical domainClaudiu Mihăilă, Tomoko Ohta, Sampo Pyysalo, et al.Journal of Bioinformatics and Computational Biology|October 29, 2010
A re-evaluation of biomedical named entity-term relationsTomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, et al.Trends in Biotechnology|June 24, 2010
Event extraction for systems biology by text mining the literatureSophia Ananiadou, Sampo Pyysalo, Jun'ichi Tsujii, et al.Bioinformatics Advances|October 16, 2024
CoNECo: a Corpus for Named Entity recognition and normalization of protein ComplexesKaterina Nastou, Mikaela Koutrouli, Sampo Pyysalo, et al.Bioinformatics (Oxford, England)|September 4, 2024
Improving dictionary-based named entity recognition with deep learningKaterina Nastou, Mikaela Koutrouli, Sampo Pyysalo, et al.Bioinformatics (Oxford, England)|September 14, 2024
STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literatureFarrokh Mehryary, Katerina Nastou, Tomoko Ohta, et al.BMC Bioinformatics|December 10, 2009
Investigating heterogeneous protein annotations toward cross-corpora utilizationYue Wang, Jin-Dong Kim, Rune Saetre, et al.Bioinformatics (Oxford, England)|September 11, 2012
Event extraction across multiple levels of biological organizationSampo Pyysalo, Tomoko Ohta, Makoto Miwa, et al.Pageof 7