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Plos Computational Biology|August 13, 2013
Reconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARMJonathan M Dreyfuss, Jeremy D Zucker, Heather M Hood, et al.
Processes (Basel, Switzerland)|April 7, 2021
Prediction of Metabolite Concentrations, Rate Constants and Post-Translational Regulation Using Maximum Entropy-Based Simulations with Application to Central Metabolism of Neurospora crassaWilliam R Cannon, Jeremy D Zucker, Douglas J Baxter, et al.
Msystems|November 9, 2016
Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil MetagenomesRichard Allen White, Eric M Bottos, Taniya Roy Chowdhury, et al.
Frontiers in Immunology|March 24, 2025
Computational tools and data integration to accelerate vaccine development: challenges, opportunities, and future directionsLindsey N Anderson, Charles Tapley Hoyt, Jeremy D Zucker, et al.
Frontiers in Bioengineering and Biotechnology|March 5, 2026
Prediction of non-intuitive metabolic targets with bayesian metabolic control analysis to improve 3-hydroxypropionic acid production in Aspergillus nigerZiyu Dai, Jeremy D Zucker, Yichao Han, et al.
Plos Computational Biology|May 29, 2015
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell ModelsJonathan R Karr, Alex H Williams, Jeremy D Zucker, et al.
Frontiers in Bioengineering and Biotechnology|February 15, 2021
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloidesJoonhoon Kim, Samuel T Coradetti, Young-Mo Kim, et al.
Biotechnology for Biofuels and Bioproducts|March 29, 2023
Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus speciesZiyu Dai, Kyle R Pomraning, Shuang Deng, et al.
Cell Systems|December 17, 2018
Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic PathwaysJennifer M Hurley, Meaghan S Jankowski, Hannah De Los Santos, et al.
Tuberculosis (Edinburgh, Scotland)|May 22, 2010
TB database 2010: overview and updateJames E Galagan, Peter Sisk, Christian Stolte, et al.
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